PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01033.1.g00140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 439aa    MW: 45685.5 Da    PI: 6.4538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01033.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.2e-091672061155
                                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Zmw_sc01033.1.g00140.1.sm.mkhc 167 LRRERIAERMKALQELVPNA-----NKTDKATMLDEIIDYVKFLQ 206
                                     6******************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.198156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-12166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7166211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6167206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-9168209No hitNo description
Gene3DG3DSA:4.10.280.103.1E-12169213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MQPTAREMQA MAAAGQISLD DLRAAVGGAG GAHDEFLDQM LGASLPQSAW PDLSGGKAPE  60
GMQQQQFGGL YDESALLASR LREHQISGGP AGAEEKRMVL QQLADLRQGH HGMLLPLSLG  120
SGGSGGDVQA LAANSTGGEA GGVFTGSFAG SLQHHQQQQR FQPHTQLRRE RIAERMKALQ  180
ELVPNANKTD KATMLDEIID YVKFLQLQVL SMSRLGGAGA VAPLVADMSS EVTCYFSPAY  240
FPLSLDANFS RTRKNPRDVN ELFSAAADGY CHAPTATAPR VPHAEMPLLP SRNHRLSLHL  300
SVHAQGRGSG GGAAPAAESE GLAATEQQVA KLMEEDMGTA MQYLQGKGLC LMPVSLASAI  360
SSATCHMRPG SLQAGLGAAA AHHMAAAMRL PPSMNGDAVP ASPSLSVLTA QSAMANGVGA  420
DGEASQQQQA KDAASVSKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462383.12e-74hypothetical protein SORBIDRAFT_02g024750
TrEMBLC5XCU42e-74C5XCU4_SORBI; Putative uncharacterized protein Sb02g024750
STRINGSb02g024750.15e-74(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118